SeneSys

Konrath, F., M. Willenbrock, D. Busse, C. Scheidereit, and J. Wolf (2023). "A computational model of the DNA damage-induced IKK/ NF-κB pathway reveals a critical dependence on irradiation dose and PARP-1,." iScience 26(^10). doi.org/10.1016/j.isci.2023.107917.

Weber, L., F. Barth, L. Lorenz, F. Konrath, K. Huska, J. Wolf, and U. Leser (2023). "PEDL plus : protein-centered relation extraction from PubMed at your fingertip." Bioinformatics 39(11). doi.org/10.1093/bioinformatics/btad603.

Denker, S., A. Bittner, M. Frick, J. Kase, J. Hoffmann, C. Trenker, U. Keller, C. Bogner, A. Huttmann, J. Durig, M. Janz, S. Mathas, R. Marks, U. Krohn, I. K. Na, L. Bullinger and C. A. Schmitt (2022). "Ibrutinib- and bortezomib-extended R-CHOP induction in elderly higher-risk patients newly diagnosed with diffuse large B-cell lymphoma - first analysis of toxicity and efficacy signals." Leuk Lymphoma 63(1): 84-92. SeneSys www.ncbi.nlm.nih.gov/pubmed/34414850.

Lee, S., Y. Yu, J. Trimpert, F. Benthani, M. Mairhofer, P. Richter-Pechanska, E. Wyler, D. Belenki, S. Kaltenbrunner, M. Pammer, L. Kausche, T. C. Firsching, K. Dietert, M. Schotsaert, C. Martinez-Romero, G. Singh, S. Kunz, D. Niemeyer, R. Ghanem, H. J. F. Salzer, C. Paar, M. Mulleder, M. Uccellini, E. G. Michaelis, A. Khan, A. Lau, M. Schonlein, A. Habringer, J. Tomasits, J. M. Adler, S. Kimeswenger, A. D. Gruber, W. Hoetzenecker, H. Steinkellner, B. Purfurst, R. Motz, F. Di Pierro, B. Lamprecht, N. Osterrieder, M. Landthaler, C. Drosten, A. Garcia-Sastre, R. Langer, M. Ralser, R. Eils, M. Reimann, D. N. Y. Fan and C. A. Schmitt (2021). "Virus-induced senescence is a driver and therapeutic target in COVID-19." Nature 599(7884): 283-289. SeneSys doi.org/10.1038/s41586-021-03995-1.

Prasanna, P. G., D. E. Citrin, J. Hildesheim, M. M. Ahmed, S. Venkatachalam, G. Riscuta, D. Xi, G. Zheng, J. V. Deursen, J. Goronzy, S. J. Kron, M. S. Anscher, N. E. Sharpless, J. Campisi, S. L. Brown, L. J. Niedernhofer, A. O'Loghlen, A. G. Georgakilas, F. Paris, D. Gius, D. A. Gewirtz, C. A. Schmitt, M. E. Abazeed, J. L. Kirkland, A. Richmond, P. B. Romesser, S. W. Lowe, J. Gil, M. S. Mendonca, S. Burma, D. Zhou and C. N. Coleman (2021). "Therapy-Induced Senescence: Opportunities to Improve Anticancer Therapy." J Natl Cancer Inst 113(10): 1285-1298. SeneSys doi.org/10.1093/jnci/djab064.

Thobe, K., F. Konrath, B. Chapuy and J. Wolf (2021). "Patient-Specific Modeling of Diffuse Large B-Cell Lymphoma." Biomedicines 9(11): 1655. SeneSys doi.org/10.3390/biomedicines9111655.

Wienand, K. and B. Chapuy (2021). "Molecular classification of aggressive lymphomas—past, present, future." Hematological Oncology 39(S1): 24–30. SeneSys doi.org/10.1002/hon.2847.

Reimann, M., J. F. Schrezenmeier, P. Richter-Pechanska, A. Dolnik, T. P. Hick, K. Schleich, X. Cai, D. N. Y. Fan, P. Lohneis, S. Masswig, S. Denker, A. Busse, G. Knittel, R. Flümann, D. Childs, L. Childs, A. M. Gätjens-Sanchez, L. Bullinger, A. Rosenwald, H. C. Reinhardt, and C. A. Schmitt (2020). "Adaptive T-cell immunity controls senescence-prone MyD88- or CARD11-mutant B-cell lymphomas." Blood.  doi.org/10.1182/blood.2020005244.

Weber, L., K. Thobe, O. A. M. Lozano, J. Wolf, and U. Leser (2020). "PEDL: extracting protein-protein associations using deep language models and distant supervision." BIOINFORMATICS 36: 490–498.  doi.org/10.1093/bioinformatics/btaa430.