Reinders, J., Altenbuchinger, M., Limm, K., Schwarzfischer, P., Scheidt, T., Strasser, L., Richter, J., Szczepanowski, M., Huber, C. G., Klapper, W., Spang, R. and Oefner, P. J. (2020). "Platform independent protein-based cell-of-origin subtyping of diffuse large B-cell lymphoma in formalin-fixed paraffin-embedded tissue." Scientific Reports 10(7876): 1–11.

Rustad, E. H., Yellapantula, V., Leongamornlert, D., Bolli, N., Ledergor, G., Nadeu, F., Angelopoulos, N., Dawson, K. J., Mitchell, T. J., Osborne, R. J., Ziccheddu, B., Carniti, C., Montefusco, V., Corradini, P., Anderson, K. C., Moreau, P., Papaemmanuil, E., Alexandrov, L. B., Puente, X. S., Campo, E., Siebert, R., Avet-Loiseau, H., Landgren, O., Munshi, N. and Campbell, P. J. (2020). "Timing the initiation of multiple myeloma." Nature Communications 11(1).

Voigt, S., Sterz, K. R., Giehler, F., Mohr, A.-W., Wilson, J. B., Moosmann, A. and Kieser, A. (2020). "A central role of IKK2 and TPL2 in JNK activation and viral B-cell transformation." J Nat Commun 11(1): 1--16.

Wagner, M., Reinke, S., Haensel, R., Klapper, W. and Braumann, U.-D. (2020). "An image dataset related to automated macrophage detection in immunostained lymphoma tissue samples." GigaScience 9(3).


Cirillo, M., Reinke, S., Klapper, W. and Borchmann, S. (2019). "The translational science of hodgkin lymphoma." British Journal of Haematology 184(1): 30-44.

Perez-Rubio, P., Lottaz, C. and Engelmann, J. C. (2019). "FastqPuri: high-performance preprocessing of RNA-seq data." BMC Bioinformatics 20(1): 226.

Sun, X., Heinrich, P., Berger, R. S., Oefner, P. J. and Dettmer, K. (2019). "Quantification and (13)C-Tracer analysis of total reduced glutathione by HPLC-QTOFMS/MS." Anal Chim Acta 1080: 127-137.

Wagner, M., Hansel, R., Reinke, S., Richter, J., Altenbuchinger, M., Braumann, U. D., Spang, R., Loffler, M. and Klapper, W. (2019). "Automated macrophage counting in DLBCL tissue samples: a ROF filter based approach." Biol Proced Online 21: 13.


Chapuy, B., Stewart, C., Dunford, A. J., Kim, J., Kamburov, A., Redd, R. A., Lawrence, M. S., Roemer, M. G. M., Li, A. J., Ziepert, M., Staiger, A. M., Wala, J. A., Ducar, M. D., Leshchiner, I., Rheinbay, E., Taylor-Weiner, A., Coughlin, C. A., Hess, J. M., Pedamallu, C. S., Livitz, D., Rosebrock, D., Rosenberg, M., Tracy, A. A., Horn, H., van Hummelen, P., Feldman, A. L., Link, B. K., Novak, A. J., Cerhan, J. R., Habermann, T. M., Siebert, R., Rosenwald, A., Thorner, A. R., Meyerson, M. L., Golub, T. R., Beroukhim, R., Wulf, G. G., Ott, G., Rodig, S. J., Monti, S., Neuberg, D. S., Loeffler, M., Pfreundschuh, M., Trümper, L., Getz, G. and Shipp, M. A. (2018). "Molecular subtypes of diffuse large B cell lymphoma are associated with distinct pathogenic mechanisms and outcomes." Nature Medicine 24(5): 679-690.

Feist, M., Schwarzfischer, P., Heinrich, P., Sun, X., Kemper, J., von Bonin, F., Perez-Rubio, P., Taruttis, F., Rehberg, T., Dettmer, K., Gronwald, W., Reinders, J., Engelmann, J. C., Dudek, J., Klapper, W., Trümper, L., Spang, R., Oefner, P. J. and Kube, D. (2018). "Cooperative STAT/NF-κB signaling regulates lymphoma metabolic reprogramming and aberrant GOT2 expression." Nature Communications 9(1): 1514.

Heinrich, P., Kohler, C., Ellmann, L., Kuerner, P., Spang, R., Oefner, P. J. and Dettmer, K. (2018). "Correcting for natural isotope abundance and tracer impurity in MS-, MS/MS- and high-resolution-multiple-tracer-data from stable isotope labeling experiments with IsoCorrectoR." Scientific Reports 8(1): 17910.

Paul, U., Richter, J., Stuhlmann-Laiesz, C., Kreuz, M., Nagel, I., Horn, H., Staiger, A. M., Aukema, S. M., Hummel, M., Ott, G., Spang, R., Rosenwald, A., Feller, A. C., Cogliatti, S., Stein, H., Hansmann, M.-L., Moller, P., Szczepanowski, M., Burkhardt, B., Pfreundschuh, M., Schmitz, N., Loeffler, M., Trümper, L., Siebert, R. and Klapper, W. (2018). "Advanced patient age at diagnosis of diffuse large B-cell lymphoma is associated with molecular characteristics including ABC-subtype and high expression of MYC." Leukemia & Lymphoma 59(5): 1213-1221.

Perera-Bel, J., Hutter, B., Heining, C., Bleckmann, A., Fröhlich, M., Fröhling, S., Glimm, H., Brors, B. and Beißbarth, T. (2018). "From somatic variants towards precision oncology: Evidence-driven reporting of treatment options in molecular tumor boards." Genome Medicine 10(1): 18.

Reinke, S., Richter, J., Fend, F., Feller, A., Hansmann, M.-L., Hüttl, K., Oschlies, I., Ott, G., Möller, P., Rosenwald, A., Stein, H., Altenbuchinger, M., Spang, R. and Klapper, W. (2018). "Round-robin test for the cell-of-origin classification of diffuse large B-cell lymphoma-a feasibility study using full slide staining." Virchows Archiv: An International Journal of Pathology 473(3): 341-349.

Witzel, F. and Blüthgen, N. (2018). "When More Is Less: Dual Phosphorylation Protects Signaling Off State against Overexpression." Biophysical Journal 115(7): 1383-1392.

Wolff, A., Bayerlová, M., Gaedcke, J., Kube, D. and Beißbarth, T. (2018). "A comparative study of RNA-Seq and microarray data analysis on the two examples of rectal-cancer patients and Burkitt Lymphoma cells." PloS One 13(5): e0197162.

Zacharias, H. U., Altenbuchinger, M. and Gronwald, W. (2018). "Statistical Analysis of NMR Metabolic Fingerprints: Established Methods and Recent Advances." Metabolites 8(3).


Altenbuchinger, M., Schwarzfischer, P., Rehberg, T., Reinders, J., Kohler, C.W., Gronwald, W., Richter, J., Szczepanowski, M., Masqué-Soler, N., Klapper, W., Oefner, P.J., Spang, R., 2017. Molecular signatures that can be transferred across different omics platforms. Bioinformatics 33, i333–i340.

Aukema, S.M., van Pel, R., Nagel, I., Bens, S., Siebert, R., Rosati, S., van den Berg, E., Bosga-Bouwer, A.G., Kibbelaar, R.E., Hoogendoorn, M., van Imhoff, G.W., Kluin-Nelemans, J.C., Kluin, P.M., Nijland, M., 2017. MYC expression and translocation analyses in low-grade and transformed Follicular Lymphoma. Histopathology.

Linke, F., Harenberg, M., Nietert, M.M., Zaunig, S., von Bonin, F., Arlt, A., Szczepanowski, M., Weich, H.A., Lutz, S., Dullin, C., Janovská, P., Krafčíková, M., Trantírek, L., Ovesná, P., Klapper, W., Beissbarth, T., Alves, F., Bryja, V., Trümper, L., Wilting, J., Kube, D., 2017. Microenvironmental interactions between endothelial and lymphoma cells: a role for the canonical WNT pathway in Hodgkin lymphoma. Leukemia 31, 361–372.

Zacharias, H.U., Rehberg, T., Mehrl, S., Richtmann, D., Wettig, T., Oefner, P.J., Spang, R., Gronwald, W., Altenbuchinger, M., 2017. Scale-Invariant Biomarker Discovery in Urine and Plasma Metabolite Fingerprints. J. Proteome Res. 16, 3596–3605.


Kruppa, J., Kramer, F., Beissbarth, T.Jung, K., 2016. A simulation framework for correlated count data of features subsets in high-throughput sequencing or proteomics experiments. Stat Appl Genet Mol Biol, 15(5), 401-414.

Szczepanowski, M., Masqué-Soler, N., Schlesner, M., Haake, A., Richter, J., Wagener, R., Burkhardt, B., Kreuz, M., Siebert, R., Consortium, I. M.-S.Klapper, W., 2016. Immunohistochemical detection of inhibitor of DNA binding 3 mutational variants in mature aggressive B-cell lymphoma. Haematologica, 101(6), e259-261.

Wachter, A.Beißbarth, T., 2016. Decoding Cellular Dynamics in Epidermal Growth Factor Signaling Using a New Pathway-Based Integration Approach for Proteomics and Transcriptomics Data. Front Genet, 6, 351.



Masqué-Soler, N., Szczepanowski, M., Kohler, C.W., Aukema, S.M., Nagel, I., Richter, J., Siebert, R., Spang, R., Burkhardt, B., Klapper, W., 2015. Clinical and pathological features of Burkitt lymphoma showing expression of BCL2--an analysis including gene expression in formalin-fixed paraffin-embedded tissue. Br. J. Haematol. 171, 501–508.

Wachter, A., Beißbarth, T., 2015. pwOmics: an R package for pathway-based integration of time-series omics data using public database knowledge. Bioinformatics 31, 3072–3074.



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