MelAutim

Lai, X., Keller, C., Santos, G., Schaft, N., Dörrie, J. and Vera, J. (2022). "Multi-Level Computational Modeling of Anti-Cancer Dendritic Cell Vaccination Utilized to Select Molecular Targets for Therapy Optimization." Frontiers in Cell and Developmental Biology 9. www.frontiersin.org/article/10.3389/fcell.2021.746359.

Lai, X., Zhou, J., Wessely, A., Heppt, M., Maier, A., Berking, C., Vera, J. and Zhang, L. (2022). "A disease network-based deep learning approach for characterizing melanoma." Int J Cancer 150(6): 1029–1044. doi.org/10.1002/ijc.33860.

Pützer, B.M. and Sabapathy, K. (2022). "Editorial: Multidisciplinary Approaches in Exploring Cancer Heterogeneity, TME and Therapy Resistance: Perspectives for Systems Medicine." Frontiers in Cell and Developmental Biology 10. www.frontiersin.org/article/10.3389/fcell.2022.842596.

Zierold, S., Akcetin, L.S., Gresser, E., Maier, A.M., König, A., Kramer, R., Theurich, S., Tomsitz, D., Erdmann, M., French, L.E., Rudelius, M. and Heinzerling, L. (2022). "Checkpoint-inhibitor induced Polyserositis with Edema." Cancer Immunology, Immunotherapy. doi.org/10.1007/s00262-022-03211-7.

Bailey, C.G., Gupta, S., Metierre, C., Amarasekera, P.M.S., O'Young, P., Kyaw, W., Laletin, T., Francis, H., Semaan, C., Sharifi Tabar, M., Singh, K.P., Mullighan, C.G., Wolkenhauer, O., Schmitz, U. and Rasko, J.E.J. (2021). "Structure-function relationships explain CTCF zinc finger mutation phenotypes in cancer." Cell Mol Life Sci. www.ncbi.nlm.nih.gov/pubmed/34657170.

Faas, M., Ipseiz, N., Ackermann, J., Culemann, S., Grüneboom, A., Schröder, F., Rothe, T., Scholtysek, C., Eberhardt, M., Böttcher, M., Kirchner, P., Stoll, C., Ekici, A., Fuchs, M., Kunz, M., Weigmann, B., Wirtz, S., Lang, R., Hofmann, J., Vera, J., Voehringer, D., Michelucci, A., Mougiakakos, D., Uderhardt, S., Schett, G. and Krönke, G. (2021). "IL-33-induced metabolic reprogramming controls the differentiation of alternatively activated macrophages and the resolution of inflammation." Immunity 54(11): 2531–2546.e2535. doi.org/10.1016/j.immuni.2021.09.010.

Hornschuh, M., Wirthgen, E., Wolfien, M., Singh, K.P., Wolkenhauer, O. and Dabritz, J. (2021). "The role of epigenetic modifications for the pathogenesis of Crohn's disease." Clinical Epigenetics 13(1): 108. www.ncbi.nlm.nih.gov/pubmed/33980294.

Husain, B., Kirchberger, M.C., Erdmann, M., Schüpferling, S., Abolhassani, A.-R., Fröhlich, W., Berking, C. and Heinzerling, L. (2021). "Inflammatory markers in autoimmunity induced by checkpoint inhibitors." Journal of Cancer Research and Clinical Oncology 147(6): 1623-1630. doi.org/10.1007/s00432-021-03550-5.

Lai, X., Dreyer, F.S., Cantone, M., Eberhardt, M., Gerer, K.F., Jaitly, T., Uebe, S., Lischer, C., Ekici, A., Wittmann, J., Jack, H.M., Schaft, N., Dorrie, J. and Vera, J. (2021). "Network- and systems-based re-engineering of dendritic cells with non-coding RNAs for cancer immunotherapy." Theranostics 11(3): 1412-1428. doi.org/10.7150/thno.53092.

Logotheti, S., Richter, C., Murr, N., Spitschak, A., Marquardt, S. and Putzer, B.M. (2021). "Mechanisms of Functional Pleiotropy of p73 in Cancer and Beyond." Front Cell Dev Biol 9: 737735. www.ncbi.nlm.nih.gov/pubmed/34650986.

Marquardt, S., Pavlopoulou, A., Takan, I., Dhar, P., Pützer, B.M. and Logotheti, S. (2021). "A Systems-Based Key Innovation-Driven Approach Infers Co-option of Jaw Developmental Programs During Cancer Progression." Front Cell Dev Biol 0. doi.org/10.3389/fcell.2021.682619.

Sauerer, T., Lischer, C., Weich, A., Berking, C., Vera, J. and Dorrie, J. (2021). "Single-Molecule RNA Sequencing Reveals IFNgamma-Induced Differential Expression of Immune Escape Genes in Merkel Cell Polyomavirus-Positive MCC Cell Lines." Frontiers in Microbiology 12: 785662. www.ncbi.nlm.nih.gov/pubmed/35003017.

Vera, J., Lischer, C., Nenov, M., Nikolov, S., Lai, X. and Eberhardt, M. (2021). "Mathematical Modelling in Biomedicine: A Primer for the Curious and the Skeptic." International Journal of Molecular Sciences 22(2): 547. doi.org/10.3390/ijms22020547.

Wagner, N., Eberhardt, M., Vera, J., Cuomo, F., Blume, K., Galster, S., Achenbach, S., Laffert, B., Kahlert, H., Schuler, G., Berking, C. and Baur, A. (2021). "Plasma-derived extracellular vesicles discriminate type-1 allergy subjects from non-allergic controls." World Allergy Organ J 14(9): 100583. www.ncbi.nlm.nih.gov/pubmed/34659629.

Logotheti, S., S. Marquardt, S. K. Gupta, C. Richter, B. A. H. Edelhäuser, D. Engelmann, J. Brenmoehl, C. Söhnchen, N. Murr, M. Alpers, K. P. Singh, O. Wolkenhauer, D. Heckl, A. Spitschak, and B. M. Pützer (2020). "LncRNA-SLC16A1-AS1 induces metabolic reprogramming during Bladder Cancer progression as target and co-activator of E2F1." Theranostics 10(21). doi.org/10.7150/thno.44176.

Logotheti, S., S. Marquardt, C. Richter, R. Sophie Hain, N. Murr, I. Takan, A. Pavlopoulou, and B. M. Pützer (2020). "Neural Networks Recapitulation by Cancer Cells Promotes Disease Progression: A Novel Role of p73 Isoforms in Cancer-Neuronal Crosstalk." Cancers (Basel) 12(12): 3789. doi.org/10.3390/cancers12123789.

Serhan, C. N., S. K. Gupta, M. Perretti, C. Godson, E. Brennan, Y. Li, O. Soehnlein, T. Shimizu, O. Werz, V. Chiurchiù, A. Azzi, M. Dubourdeau, S. S. Gupta, P. Schopohl, M. Hoch, D. Gjorgevikj, F. M. Khan, D. Brauer, A. Tripathi, K. Cesnulevicius, D. Lescheid, M. Schultz, E. Särndahl, D. Repsilber, R. Kruse, A. Sala, J. Z. Haeggström, B. D. Levy, J. G. Filep, and O. Wolkenhauer (2020). "The Atlas of Inflammation Resolution (AIR)." Mol Aspects Med 74: 100894. doi.org/10.1016/j.mam.2020.100894.

Singh, N., M. Eberhardt, O. Wolkenhauer, J. Vera, and S. K. Gupta (2020). "An integrative network-driven pipeline for systematic identification of lncRNA-associated regulatory network motifs in metastatic melanoma." BMC Bioinformatics 21(1): 1–17. doi.org/10.1186/s12859-020-03656-6.