SyMBoD

Publikationen

2022

Biadglegne, F., Schmidt, J.R., Engel, K.M., Lehmann, J., Lehmann, R.T., Reinert, A., König, B., Schiller, J., Kalkhof, S. and Sack, U. (2022). "Mycobacterium tuberculosis Affects Protein and Lipid Content of Circulating Exosomes in Infected Patients Depending on Tuberculosis Disease State." Biomedicines 10(4): 783. doi.org/10.3390/biomedicines10040783.

Furesi, G., de Jesus Domingues, A.M., Alexopoulou, D., Dahl, A., Hackl, M., Schmidt, J.R., Kalkhof, S., Kurth, T., Taipaleenmaki, H., Conrad, S., Hofbauer, C., Rauner, M. and Hofbauer, L.C. (2022). "Exosomal miRNAs from Prostate Cancer Impair Osteoblast Function in Mice." International Journal of Molecular Sciences 23(3). www.ncbi.nlm.nih.gov/pubmed/35163219.

Han, P., Gomez, G.A., Duda, G.N., Ivanovski, S. and Poh, P.S.P. (2022). "Scaffold geometry modulation of mechanotransduction and its influence on epigenetics." Acta Biomater. doi.org/10.1016/j.actbio.2022.01.020.

Hartung, M., Anastasi, E., Mamdouh, Z.M., Nogales, C., Schmidt, H.H.H.W., Baumbach, J., Zolotareva, O. and List, M. (2022). "Cancer driver drug interaction explorer." Nucleic Acids Res. doi.org/10.1093/nar/gkac384.

Poh, P.S., Lingner, T., Kalkhof, S., Märdian, S., Baumbach, J., Dondl, P., Duda, G.N. and Checa, S. (2022). "Enabling technologies towards personalization of scaffolds for large bone defect regeneration." Curr Opin Biotechnol 74: 263–270. doi.org/10.1016/j.copbio.2021.12.002.

Torkzadehmahani, R., Nasirigerdeh, R., Blumenthal, D.B., Kacprowski, T., List, M., Matschinske, J., Spaeth, J., Wenke, N.K. and Baumbach, J. (2022). "Privacy-Preserving Artificial Intelligence Techniques in Biomedicine." Methods of Information in Medicine. www.ncbi.nlm.nih.gov/pubmed/35062032.

2021

Lazareva, O., Baumbach, J., List, M. and Blumenthal, D.B. (2021). "On the limits of active module identification." Brief Bioinform 22(5). www.ncbi.nlm.nih.gov/pubmed/33782690.

Manz, Q., Tsoy, O., Fenn, A., Baumbach, J., Völker, U., List, M. and Kacprowski, T. (2021). "ASimulatoR: splice-aware RNA-Seq data simulation." Bioinformatics 37(18): 3008–3010. doi.org/10.1093/bioinformatics/btab142.

Manz, Q., Tsoy, O., Fenn, A., Baumbach, J., Völker, U., List, M. and Kacprowski, T. (2021). "splice-aware RNA-Seq data simulation." Bioinformatics. doi.org/10.1093/bioinformatics/btab142.

Sadegh, S., Skelton, J., Anastasi, E., Bernett, J., Blumenthal, D.B., Galindez, G., Salgado-Albarrán, M., Lazareva, O., Flanagan, K., Cockell, S., Nogales, C., Casas, A.I., Schmidt, H.H.H.W., Baumbach, J., Wipat, A. and Kacprowski, T. (2021). "Network medicine for disease module identification and drug repurposing with the NeDRex platform." Nature Communications 12(6848): 1–12. doi.org/10.1038/s41467-021-27138-2.

Sarno, F., Benincasa, G., List, M., Barabasi, A.L., Baumbach, J., Ciardiello, F., Filetti, S., Glass, K., Loscalzo, J., Marchese, C., Maron, B.A., Paci, P., Parini, P., Petrillo, E., Silverman, E.K., Verrienti, A., Altucci, L., Napoli, C. and International Network Medicine, C. (2021). "Clinical epigenetics settings for cancer and cardiovascular diseases: real-life applications of network medicine at the bedside." Clinical Epigenetics 13(1): 66. doi.org/10.1186/s13148-021-01047-z.

2020

Sadegh, S., Matschinske, J., Blumenthal, D.B., Galindez, G., Kacprowski, T., List, M., Nasirigerdeh, R., Oubounyt, M., Pichlmair, A., Rose, T.D., Salgado-Albarran, M., Spaeth, J., Stukalov, A., Wenke, N.K., Yuan, K., Pauling, J.K. and Baumbach, J. (2020). "Exploring the SARS-CoV-2 virus-host-drug interactome for drug repurposing." Nature Communications 11(1). doi.org/10.1038/s41467-020-17189-2.

Weber, P., Pauling, J.K., List, M. and Baumbach, J. (2020). "BALSAM—An Interactive Online Platform for Breath Analysis, Visualization and Classification." Metabolites 10(10): 393. doi.org/10.3390/metabo10100393.

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